Tag: Genetics, Genomics and Cell Biology of Infection

Associate Professor Clare Casteel (SIPS) has a paper out in Nature Plants, in collaboration with labs at UC Davis: “Organic management promotes natural pest control through altered plant resistance to insects” PAPER:  https://www.nature.com/articles/s41477-020-0656-9.epdf

Fast evolving RNA viruses, such as rotavirus, influenza virus, human immunodeficiency virus, and zika virus, are a leading cause of death worldwide and represent a major challenge for global disease control. Despite their small genome size, often comprised of only a few thousand nucleotides and a handful of genes, it remains exceedingly difficult to study […]

The Moreau Lab studies the evolution of symbiosis between animals and their diverse microbial communities. Current work focuses on the benefits of microbial communities for ant hosts from nutrient provisioning to contributions to cuticle formation. Methods include amplicon sequencing, quantification, metagenomics, functional assays, experimental manipulations, and more. This work is deeply rooted in natural history […]

The Pawlowska Lab studies interactions between fungi and bacteria using several model systems. Potential projects involve: (1) dissecting the mechanisms of innate immunity in fungi, (2) evaluating the impact of bacteriome on phenotypic diversity of fungi, and (3) examining the role of common mycorrhizal networks in plant microbiome assembly.

Our research is directed at characterizing structures and biological function of biogenic small molecules (BSMs) that regulate development and immune responses in plants and animals and serve important functions with associated microbiota. Using comparative metabolomic approaches we have engaged in a comprehensive effort to characterize[...]

Dr. Schang uses small molecules with drug-like properties to probe the ways viruses cause infections. He is most interested in finding common features among the many viruses that cause disease in animals or humans, including how they enter cells and how they replicate and cause[...]

My program is focused on drug discovery and the pathogenesis of infectious human disease. We work closely with the Gates Foundation and the California Institute for Biomedical Research to run high-throughput drug screening on Mycobacterium tuberculosis within the context of the host. We also have human subjects[...]

A main driver of vector-borne disease transmission is the ecology of the insect vector. Changes in climate and land use alter ecological relationships insect vectors have with their hosts and pathogens, resulting in shifts in transmission. The research in the Murdock lab applies ecological and[...]

We study the evolution of vertebrate gut microbes. Our work focuses on the co-evolutionary histories of animals and their microbiota using a combination of omics approaches, gnotobiotic experiments, and field studies. Students will gain experience in anaerobic bacterial culturing, genome sequencing workflows, and comparative genomics bioinformatics[...]

We study how pathogens influence pollinator health. Students collect data on plant-pollinator visitation networks, pathogen prevalence in bees and at flowers, pathogen replication and impacts on host survival, or conduct manipulative experiments to understand transmission parameters. The overall goal of our work is to improve[...]