Tag: Microbiota and Microbiomes

We study the mechanisms underlying ecological interactions between fungi and bacteria.  Student projects will focus on current work to characterize the bacteria associated with mycorrhizal fungi in poorly studied desert habitats in California and Israel. Students will learn culture and microscopy techniques, and phylogenetic analysis.

My laboratory studies viruses, with a particular focus on viruses that have jumped into new hosts to cause epidemics of disease. One model we study is canine parvovirus, which is a cat virus that transferred into dogs in the mid-1970s and subsequently caused a global[...]

My research spans infection biology across scales and systems, utilizing a variety of theoretical and computational approaches, such as: modeling of infectious disease dynamics in complex populations, networks and landscapes; characterizing the structure, function and evolution of cellular networks involved in pathogen virulence and host[...]

The Moreau lab focuses on the symbiotic factors that drive evolutionary diversification in ants. One example question is whether seed-eating ants have distinct gut microbiomes to facilitate their use of this food source. Students will characterize the gut microbiomes of ant species using 16S amplicon[...]

The Leifer lab investigates how the immune system detects and initiates inflammatory responses to microbes. We focus on innate immune macrophages and the regulatory mechanisms that control inflammation through Toll-like receptors (TLRs).

The goal of the Kao-Kniffin Lab is to understand the functional role of rhizosphere microbiomes in modifying plant traits. The rhizosphere harbors a tremendous diversity of soil microorganisms that enhance or inhibit plant growth. We are applying concepts in ecology and evolution to assemble microbiomes[...]

We study how lipids mediate host-microbiome interactions.   A potential student project in the lab involves using techniques developed in the lab to identify novel interactions of saturated fatty acids with the gut microbiome and developing advanced techniques in anaerobic microbial genetics to determine the consequences[...]

The Hendry lab studies how environmental bacteria interact with insect hosts. Our main focus is understanding how plant-associated bacteria influence the health and behavior of insect herbivores. Students will design mesocosm experiments with culturable bacteria growing on plants and herbivorous insects, using skills in bacteriology[...]

We use Bacillus subtilis as a model system to characterize the bacterial stress responses elicited by metal ion limitation and excess during infection, and by host-produced antibiotics that interfere with integrity of the cell envelope. The resulting insights are relevant for understanding the mechanisms that allow bacterial[...]

Our research uses a combination of molecular, genetic, and proteomics approaches to understand how insects transmit plant pathogens and how pathogens manipulate host plants to ensure replication and transmission. For instance, students will characterize the transmission rates of viruses by different genotypes of aphids in[...]